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1

[IEEE 2008 Seventh International Conference on Machine Learning and Applications - San Diego, CA, USA (2008.12.11-2008.12.13)] 2008 Seventh International Conference on Machine Learning and Applications - Model Based Unsupervised Learning Guided by Abundant Background Samples

Mahdi, Rami N., Rouchka, Eric C.

Year:

2008

Language:

english

File:

PDF, 569 KB

english, 2008

2

Reduced HyperBF Networks: Regularization by Explicit Complexity Reduction and Scaled Rprop-Based Training

Mahdi, R.N., Rouchka, E.C.

Journal:

IEEE Transactions on Neural Networks

Year:

2011

Language:

english

File:

PDF, 555 KB

english, 2011

3

Nuclear respiratory factor-1 and bioenergetics in tamoxifen-resistant breast cancer cells

Radde, Brandie N., Ivanova, Margarita M., Mai, Huy Xuan, Alizadeh-Rad, Negin, Piell, Kellianne, Van Hoose, Patrick, Cole, Marsha P., Muluhngwi, Penn, Kalbfleisch, Ted S., Rouchka, Eric C., Hill, Bradf

Journal:

Experimental Cell Research

Year:

2016

Language:

english

File:

PDF, 703 KB

english, 2016

4

Detecting and accounting for multiple sources of positional variance in peak list registration analysis and spin system grouping

Smelter, Andrey, Rouchka, Eric C., Moseley, Hunter N. B.

Journal:

Journal of Biomolecular NMR

Year:

2017

Language:

english

File:

PDF, 3.25 MB

english, 2017

5

Glial granules contain germline proteins in the Drosophila brain, which regulate brain transcriptome

Tindell, Samuel J., Rouchka, Eric C., Arkov, Alexey L.

Journal:

Communications Biology

Year:

2020

File:

PDF, 5.04 MB

2020

6

Integrative database management for mouse development: Systems and concepts

Amar V. Singh, Eric C. Rouchka, Greg A. Rempala, Caleb D. Bastian, Thomas B. Knudsen

Journal:

Birth Defects Research Part C: Embryo Today: Reviews

Year:

2007

Language:

english

File:

PDF, 603 KB

english, 2007

7

DNA-based random number generation in security circuitry

Christy M. Gearheart, Benjamin Arazi, Eric C. Rouchka

Journal:

Year:

2010

Language:

english

File:

PDF, 569 KB

english, 2010

8

Proceedings of the ninth annual UT-ORNL-KBRIN Bioinformatics Summit 2010

Eric C Rouchka, Robert M Flight, Claire Rinehart

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 206 KB

english, 2010

9

Statistical analysis of multiple significance test methods for differential proteomics

Bing Wang, Fahim Mohammad, Jun Zhang, Xinmin Yin, Eric Rouchka, Xiang Zhang

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 141 KB

english, 2010

10

Design of a DNA-based shift register

Christy M Gearheart, Eric C Rouchka, Benjamin Arazi

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 139 KB

english, 2010

11

categoryCompare: high-throughput data meta-analysis using gene annotations

Robert M Flight, Jeffrey C Petruska, Benjamin J Harrison, Eric C Rouchka

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 157 KB

english, 2011

12

Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011

Eric C Rouchka, Robert M Flight, Ramin Homayouni

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 220 KB

english, 2011

13

Meta-analysis of gene expression changes in response to radiation exposure

John Kirtley, Eric C Rouchka, Robert M Flight, Palaniappan Sethu, John W Eaton, Robert S Keynton, The University of Louisville Research Group for Diagnosing and Mitigating Human Exposure to Radiation

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 155 KB

english, 2011

14

Integrative biclustering of heterogeneous datasets using a Bayesian nonparametric model with application to chemogenomics

Dazhuo Li, Eric C Rouchka

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 108 KB

english, 2011

15

[IEEE Bioengineering (BIBE) - Taichung, Taiwan (2011.10.24-2011.10.26)] 2011 IEEE 11th International Conference on Bioinformatics and Bioengineering - A Heuristic Algorithm for Detecting Intercellular Interactions

Mohammad, Fahim, Flight, Robert M., Harrison, Benjamin J., Petruska, Jeffrey C., Rouchka, Eric C.

Year:

2011

Language:

english

File:

PDF, 901 KB

english, 2011

16

DNA media storage

Christy M. Bogard, Eric C. Rouchka, Benjamin Arazi

Journal:

Progress in Natural Science

Year:

2008

Language:

english

File:

PDF, 772 KB

english, 2008

17

Proceedings of the Eighth Annual UT-ORNL-KBRIN Bioinformatics Summit 2009

Eric C Rouchka, Julia Krushkal

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 255 KB

english, 2009

18

Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data

Eric Rouchka, Diego E Montoya-Durango, Vilius Stribinskis, Kenneth Ramos, Ted Kalbfleisch

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 450 KB

english, 2010

19

MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays

Eric C Rouchka, Abdelnaby Khalyfa, Nigel GF Cooper

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 766 KB

english, 2005

20

rMotifGen: random motif generator for DNA and protein sequences

Eric C Rouchka, C Timothy Hardin

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 971 KB

english, 2007

21

Random number generation for DNA-based security circuitry

Christy M Bogard, Eric C Rouchka, Benjamin Arazi

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 111 KB

english, 2008

22

Techniques for the analysis of trichomePelagonium xhortorumexpressed sequence tags

Joseph Morris, Eric Rouchka, David Schultz

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 117 KB

english, 2008

23

Proceedings of the Seventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2008

Eric C Rouchka, Julia Krushkal, Daniel Goldowitz

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 171 KB

english, 2008

24

Buffered codons in human transcriptional units

Rami Mahdi, Eric C Rouchka

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 123 KB

english, 2008

25

Database of exact tandem repeats in the Zebrafish genome

Journal:

Year:

2010

Language:

english

File:

PDF, 1.66 MB

english, 2010

26

In Silico characterization of phosphorylase kinase: Evidence for an alternate intronic polyadenylation site in PHKG1

Joni S. Winchester, Eric C. Rouchka, Naomi S. Rowland, Nancy A. Rice

Journal:

Molecular Genetics and Metabolism

Year:

2007

Language:

english

File:

PDF, 773 KB

english, 2007

27

AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities

Fahim Mohammad, Robert M Flight, Benjamin J Harrison, Jeffrey C Petruska, Eric C Rouchka

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 925 KB

english, 2012

28

IB4-binding sensory neurons in the adult rat express a novel 3′ UTR-extended isoform of CaMK4 that is associated with its localization to axons

Harrison, Benjamin J., Flight, Robert M., Gomes, Cynthia, Venkat, Gayathri, Ellis, Steven R., Sankar, Uma, Twiss, Jeffery L., Rouchka, Eric C., Petruska, Jeffrey C.

Journal:

The Journal of Comparative Neurology

Year:

2014

Language:

english

File:

PDF, 1.56 MB

english, 2014

29

Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012

Eric C Rouchka, Robert M Flight, Hunter NB Moseley

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 125 KB

english, 2012

30

Regulation of cell proliferation and apoptosis by growth hormone during zebrafish auditory hair cell regeneration

Gopinath Rajadinakaran, Huifang Sun, Claire Rinehart, Eric Rouchka…

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 175 KB

english, 2012

31

Proceedings of the Twelfth Annual UT-ORNL-KBRIN Bioinformatics Summit 2013

Rouchka, Eric C, Flight, Robert M

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 135 KB

english, 2013

32

Gene Structure Prediction and Alternative Splicing Analysis Using Genomically Aligned ESTs

Kan, Z., Rouchka, E. C., Gish, W. R., States, D. J.

Journal:

Genome Research

Year:

2001

Language:

english

File:

PDF, 774 KB

english, 2001

33

[IEEE 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Las Vegas, NV, USA (2012.02.23-2012.02.25)] 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Poster: Image registration and visualization tool for in-situ gene expression images

Saka, Ernur, Rouchka, Eric

Year:

2012

Language:

english

File:

PDF, 71 KB

english, 2012

34

[IEEE 2012 ASE/IEEE International Conference on BioMedical Computing (BioMedCom) - Washington, DC, USA (2012.12.14-2012.12.16)] 2012 ASE/IEEE International Conference on BioMedical Computing (BioMedCom) - Affymetrix® Mismatch (MM) Probes: Useful after All

Flight, Robert M., Eteleeb, Abdallah M., Rouchka, Eric C.

Year:

2012

Language:

english

File:

PDF, 424 KB

english, 2012

35

[IEEE 2008 IEEE International Symposium on Signal Processing and Information Technology (ISSPIT) - Sarajevo, Bosnia and Herzegovina (2008.12.16-2008.12.19)] 2008 IEEE International Symposium on Signal Processing and Information Technology - Evidence of bias towards buffered codons in human transcripts

Mahdi, Rami N., Rouchka, Eric C.

Year:

2008

Language:

english

File:

PDF, 3.41 MB

english, 2008

36

[IEEE 2009 International Conference on Machine Learning and Applications (ICMLA) - Miami, FL, USA (2009.12.13-2009.12.15)] 2009 International Conference on Machine Learning and Applications - Feature Selection in Cancer Classification from mRNA Data Based on Localized Dimension Reduction

Mahdi, Rami N., Rouchka, Eric C.

Year:

2009

Language:

english

File:

PDF, 296 KB

english, 2009

37

[IEEE 2009 10th ACIS International Conference on Software Engineering, Artificial Intelligences, Networking and Parallel/Distributed Computing - Daegu, Korea (2009.05.27-2009.05.29)] 2009 10th ACIS International Conference on Software Engineering, Artificial Intelligences, Networking and Parallel/Distributed Computing - Compute Pairwise Manhattan Distance and Pearson Correlation Coefficient of Data Points with GPU

Chang, Dar-Jen, Desoky, Ahmed H., Ouyang, Ming, Rouchka, Eric C.

Year:

2009

Language:

english

File:

PDF, 220 KB

english, 2009

38

[IEEE 2005 IEEE Swarm Intelligence Symposium, 2005. SIS 2005. - Pasadena, CA, USA (June 8-10, 2005)] Proceedings 2005 IEEE Swarm Intelligence Symposium, 2005. SIS 2005. - DNA motif detection using particle swarm optimization and expectation-maximization

Hardin, C.T., Rouchka, E.C.

Year:

2005

Language:

english

File:

PDF, 373 KB

english, 2005

39

[IEEE 2010 International Conference on Machine Learning and Applications (ICMLA) - Washington, DC, USA (2010.12.12-2010.12.14)] 2010 Ninth International Conference on Machine Learning and Applications - A Bayesian Nonparametric Model for Joint Relation Integration and Domain Clustering

Li, Dazhuo, Mohammad, Fahim, Rouchka, Eric

Year:

2010

Language:

english

File:

PDF, 211 KB

english, 2010

40

[IEEE 2008 51st IEEE International Midwest Symposium on Circuits and Systems (MWSCAS) - Knoxville, TN, USA (2008.08.10-2008.08.13)] 2008 51st Midwest Symposium on Circuits and Systems - Toward DNA-based security circuitry: First step — random number generation

Bogard, Christy M., Arazi, Benjamin, Rouchka, Eric C.

Year:

2008

Language:

english

File:

PDF, 437 KB

english, 2008

41

[IEEE Bioengineering (BIBE) - Taichung, Taiwan (2011.10.24-2011.10.26)] 2011 IEEE 11th International Conference on Bioinformatics and Bioengineering - Interval Trees for Detection of Overlapping Genetic Entities

Mohammad, Fahim, Flight, Robert M., Harrison, Benjamin J., Petruska, Jeffrey C., Rouchka, Eric C.

Year:

2011

Language:

english

File:

PDF, 356 KB

english, 2011

42

[IEEE 2010 53rd IEEE International Midwest Symposium on Circuits and Systems (MWSCAS) - Seattle, WA, USA (2010.08.1-2010.08.4)] 2010 53rd IEEE International Midwest Symposium on Circuits and Systems - DNA-based dynamic logic circuitry

Gearheart, Christy M., Rouchka, Eric C., Arazi, Benjamin

Year:

2010

Language:

english

File:

PDF, 510 KB

english, 2010

43

Comparison of whole genome assemblies of the human genome

Journal:

Nucleic Acids Research

Year:

2002

Language:

english

File:

PDF, 587 KB

english, 2002

44

[IEEE 2007 4th Symposium on Computational Intelligence in Bioinformatics and Computational Biology - Honolulu, HI (2007.4.1-2007.4.5)] 2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology - Biological Sequence Mining Using Plausible Neural Network and its Application to Exon/intron Boundaries Prediction

Kuochen Li,, Dar-jen Chang,, Rouchka, E., Yuan Yan Chen,

Year:

2007

Language:

english

File:

PDF, 5.26 MB

english, 2007

45

Inorganic Arsenic-induced cellular transformation is coupled with genome wide changes in chromatin structure, transcriptome and splicing patterns

Riedmann, Caitlyn, Ma, Ye, Melikishvili, Manana, Godfrey, Steven Grason, Zhang, Zhou, Chen, Kuey Chu, Rouchka, Eric C, Fondufe-Mittendorf, Yvonne N

Journal:

Year:

2015

Language:

english

File:

PDF, 2.48 MB

english, 2015

46

RBF-TSS: Identification of Transcription Start Site in Human Using Radial Basis Functions Network and Oligonucleotide Positional Frequencies

Mahdi, Rami N., Rouchka, Eric C., Martin, Darren P.

Journal:

Year:

2009

Language:

english

File:

PDF, 229 KB

english, 2009

47

[IEEE 19th IEEE International Parallel and Distributed Processing Symposium - Denver, CO, USA (04-08 April 2005)] 19th IEEE International Parallel and Distributed Processing Symposium - Comparison of Current BLAST Software on Nucleotide Sequences

Cha, I.E., Rouchka, E.C.

Year:

2005

Language:

english

File:

PDF, 157 KB

english, 2005

48

Aligning DNA sequences using dynamic programming

Rouchka, Eric C.

Journal:

XRDS Crossroads The ACM Magazine for Students

Year:

2006

Language:

english

File:

PDF, 2.86 MB

english, 2006

49

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - An Island-Based Approach for Differential Expression Analysis

Eteleeb, Abdallah M., Flight, Robert M., Harrison, Benjamin J., Petruska, Jeffrey C., Rouchka, Eric C.

Year:

2007

Language:

english

File:

PDF, 1.66 MB

english, 2007

50

[ACM Press the 5th ACM Conference - Newport Beach, California (2014.09.20-2014.09.23)] Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '14 - A comparison of combined p-value methods for gene differential expression using RNA-seq data

Eteleeb, Abdallah M., Moseley, Hunter N., Rouchka, Eric C.

Year:

2014

Language:

english

File:

PDF, 2.19 MB

english, 2014